Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cla_1216Conserved hypothetical protein, putative ComEC/Rec2-related protein domain protein; Pfam match to PF03772.7 Competence. (418 aa)    
Predicted Functional Partners:
ctsW
Conserved hypothetical protein, possible purine/pyrimidine phosphoribosyltransferase.
 
  
 0.888
Cla_1215
Conserved hypothetical integral membrane protein; Pfam match to PF09335.2 SNARE_assoc.
       0.825
Cla_1213
Conserved hypothetical protein, 5-formyltetrahydrofolate cyclo-ligase family; Pfam match to PF01812.11 5-FTHF_cyc-lig; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.821
rny
Conserved hypothetical protein, HDIG/HD/KH domain protein; Endoribonuclease that initiates mRNA decay.
       0.821
holA
Conserved hypothetical protein; Pfam match to PF06144.4 DNA_pol3_delta.
 
   
 0.783
Cla_1510
Conserved hypothetical protein (RDD domain protein); Pfam match to PF06271.3 RDD.
  
     0.769
Cla_0960
Conserved hypothetical lipoprotein.
 
   
 0.763
Cla_0819
Conserved hypothetical protein.
  
     0.759
Cla_0940
Conserved hypothetical protein.
  
     0.759
lolA
Outer membrane lipoprotein carrier protein, LolA family; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.744
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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