Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cla_1220Peptidase, M23/M37 family; Pfam match to PF01551.13 Peptidase_M23. (385 aa)    
Predicted Functional Partners:
Cla_1221
Mg/Co/Ni transporter, MgtE family; Acts as a magnesium transporter.
 
 
   0.854
tpx2
Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
    0.816
pbpA
Penicillin-binding protein 1A; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase.
  
   
 0.704
rbn
Pfam match to PF03631.6 Ribonuclease_BN.
     
 0.646
glcD
Glycolate oxidase; Pfam matches to PF01565.14 FAD_binding_4, and to PF02913.10 FAD-oxidase_C.
       0.645
Cla_1219
Conserved hypothetical protein.
       0.645
lepP
Pfam match to PF00717.14 Peptidase_S24; Belongs to the peptidase S26 family.
  
  
 0.575
fliM
Flagellar motor switch protein FliM; Pfam match to PF02154.6 FliM.
    
   0.512
pbpC2
Penicillin-binding protein 1C; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase.
  
     0.509
mltD
Peptidoglycan-binding LysM:Lytic transglycosylase, catalytic (SLT family); Pfam matches to PF01464.11 SLT, and to PF01476.11 LysM.
 
   
 0.493
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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