STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
waaVLipooligosaccharide biosynthesis glycosyltransferase; Pfam match to PF00535.17 Glycos_transf_2. (270 aa)    
Predicted Functional Partners:
waaF
Lipopolysaccharide heptosyltransferase II; Pfam match to PF01075.8 Glyco_transf_9.
  
  
 0.893
galE
UDP-glucose 4-epimerase; Pfam match to PF01370.12 Epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
   
 0.792
waaD
ADP-L-glycero-D-mannoheptose-6-epimerase; Pfam match to PF01370.12 Epimerase.
  
  
 0.713
waaC
Lipopolysaccharide heptosyltransferase I; Pfam match to PF01075.8 Glyco_transf_9.
   
  
 0.697
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
    
 
 0.673
gmhB
Conserved hypothetical protein, putative phosphatase; Possible pseudogene; Pfam match to PF08645.2 PNK3P.
    
 
 0.667
waaE
D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
      
 0.660
htrB
Putative lipid A biosynthesis lauroyl acyltransferase; Pfam match to PF03279.4 Lip_A_acyltrans.
      
 0.660
kdtA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
      
 0.639
Cla_0297
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase, putative; Pfam matches to PF07719.8 TPR_2, and to PF00515.19 TPR_1.
 
  
 0.593
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.