STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptmEFlagellin modification protein PtmE, putative sugar-phosphate nucleotide transferase; Pfam matches to PF00571.19 CBS, and to PF00483.14 NTP_transferase. (345 aa)    
Predicted Functional Partners:
ptmD
Flagellin modification protein PtmD, putative UDP-N-acetylglucosamine 2-epimerase; Pfam match to PF02350.10 Epimerase_2.
 
  
 0.988
Cla_1237
NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.
 
 
 0.958
ptmA
Flagellin modification protein PtmA, putative oxidoreductase.
 
 
 0.951
ptmB
Flagellin modification protein PtmB, acylneuraminate cytidylyltransferase; Pfam match to PF02348.10 CTP_transf_3.
 
  
 0.940
ptmF
Flagellin modification protein PtmF.
 
    0.938
selB
Selenocysteine-specific elongation factor; Pfam matches to PF00009.18 GTP_EFTU, and to PF03144.16 GTP_EFTU_D2.
    
 0.936
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.929
ptmC
Flagellin modification protein PtmC, putative N-acetylneuraminic acid synthetase; Pfam match to PF03102.5 NeuB.
 
  
 0.929
gmhB
Conserved hypothetical protein, putative phosphatase; Possible pseudogene; Pfam match to PF08645.2 PNK3P.
 
 
 0.910
Cla_1232
LmbE-like protein; Pfam match to PF02585.8 PIG-L.
  
    0.807
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.