STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1232LmbE-like protein; Pfam match to PF02585.8 PIG-L. (223 aa)    
Predicted Functional Partners:
Cla_1233
Conserved hypothetical protein, putative formyltransferase; Pfam match to PF00551.10 Formyl_trans_N.
 
    0.822
ptmE
Flagellin modification protein PtmE, putative sugar-phosphate nucleotide transferase; Pfam matches to PF00571.19 CBS, and to PF00483.14 NTP_transferase.
  
    0.807
ptmD
Flagellin modification protein PtmD, putative UDP-N-acetylglucosamine 2-epimerase; Pfam match to PF02350.10 Epimerase_2.
       0.783
ptmC
Flagellin modification protein PtmC, putative N-acetylneuraminic acid synthetase; Pfam match to PF03102.5 NeuB.
  
    0.776
ptmF
Flagellin modification protein PtmF.
  
  
 0.775
Cla_1323
Conserved hypothetical protein, putative formyltransferase.
 
    0.775
ptmB
Flagellin modification protein PtmB, acylneuraminate cytidylyltransferase; Pfam match to PF02348.10 CTP_transf_3.
       0.769
ptmA
Flagellin modification protein PtmA, putative oxidoreductase.
       0.768
Cla_1236
Formyltransferase, putative; Pfam match to PF00551.10 Formyl_trans_N.
  
    0.756
Cla_1237
NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.
  
    0.635
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.