Cla_1237 protein (Campylobacter lari) - STRING interaction network

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Score

Cla_1237

NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase. (335 aa)

Predicted Functional Partners:

ptmE

0.958

rpsS

0.946

rpsC

0.945

rpsQ

0.945

rpsN

0.945

rpsH

0.944

rpsL

0.942

rpsE

0.941

rplD

0.940

rpsO

0.936

Your Current Organism:

Campylobacter lari

NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cla_1237	ptmE	Cla_1237	Cla_1231	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	Flagellin modification protein PtmE, putative sugar-phosphate nucleotide transferase; Pfam matches to PF00571.19 CBS, and to PF00483.14 NTP_transferase.	0.958
Cla_1237	rplD	Cla_1237	Cla_0060	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.940
Cla_1237	rpsC	Cla_1237	Cla_0065	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.945
Cla_1237	rpsE	Cla_1237	Cla_0076	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.941
Cla_1237	rpsH	Cla_1237	Cla_0073	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.944
Cla_1237	rpsL	Cla_1237	Cla_0451	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.942
Cla_1237	rpsN	Cla_1237	Cla_0072	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.945
Cla_1237	rpsO	Cla_1237	Cla_0943	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.936
Cla_1237	rpsQ	Cla_1237	Cla_0068	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.945
Cla_1237	rpsS	Cla_1237	Cla_0063	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.946
ptmE	Cla_1237	Cla_1231	Cla_1237	Flagellin modification protein PtmE, putative sugar-phosphate nucleotide transferase; Pfam matches to PF00571.19 CBS, and to PF00483.14 NTP_transferase.	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	0.958
rplD	Cla_1237	Cla_0060	Cla_1237	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase.	0.940
rplD	rpsC	Cla_0060	Cla_0065	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplD	rpsE	Cla_0060	Cla_0076	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.999
rplD	rpsH	Cla_0060	Cla_0073	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.999
rplD	rpsL	Cla_0060	Cla_0451	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.998
rplD	rpsN	Cla_0060	Cla_0072	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.999
rplD	rpsO	Cla_0060	Cla_0943	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.998
rplD	rpsQ	Cla_0060	Cla_0068	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999
rplD	rpsS	Cla_0060	Cla_0063	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999