STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cla_1237NAD-dependent epimerase/dehydratase family protein; Pfam match to PF01370.12 Epimerase. (335 aa)    
Predicted Functional Partners:
ptmE
Flagellin modification protein PtmE, putative sugar-phosphate nucleotide transferase; Pfam matches to PF00571.19 CBS, and to PF00483.14 NTP_transferase.
 
 
 0.953
ptmD
Flagellin modification protein PtmD, putative UDP-N-acetylglucosamine 2-epimerase; Pfam match to PF02350.10 Epimerase_2.
 
  
 0.925
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.764
ptmC
Flagellin modification protein PtmC, putative N-acetylneuraminic acid synthetase; Pfam match to PF03102.5 NeuB.
 
    0.756
ptmF
Flagellin modification protein PtmF.
 
  
 0.743
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.739
ptmA
Flagellin modification protein PtmA, putative oxidoreductase.
 
 
 
 0.727
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.726
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
  0.717
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.712
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.