STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cla_1244Glycosyltransferase; Pfam match to PF00535.17 Glycos_transf_2. (384 aa)    
Predicted Functional Partners:
Cla_1245
Putative two-domain glycosyltransferase; Pfam matches to PF00535.17 Glycos_transf_2, and to PF00535.17 Glycos_transf_2.
 
     0.867
waaC
Lipopolysaccharide heptosyltransferase I; Pfam match to PF01075.8 Glyco_transf_9.
  
  
 0.829
htrB
Putative lipid A biosynthesis lauroyl acyltransferase; Pfam match to PF03279.4 Lip_A_acyltrans.
     
 0.826
pglH
GalNAc alpha-1,4-transferase; Pfam match to PF00534.11 Glycos_transf_1.
 
    0.671
wlaX
Conserved hypothetical protein, putative polysaccharide biosynthesis protein.
       0.650
pglA
GalNAc alpha-1,3-transferase; Pfam match to PF00534.11 Glycos_transf_1.
 
    0.635
pglC
Galactosyltransferase; Pfam match to PF02397.7 Bac_transf.
 
  
 0.634
galE
UDP-glucose 4-epimerase; Pfam match to PF01370.12 Epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
   
 0.599
pglJ
GalNAc alpha-1,4-transferase; Pfam match to PF00534.11 Glycos_transf_1.
 
    0.594
Cla_0297
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase, putative; Pfam matches to PF07719.8 TPR_2, and to PF00515.19 TPR_1.
 
  
 0.588
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.