STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pglAGalNAc alpha-1,3-transferase; Pfam match to PF00534.11 Glycos_transf_1. (375 aa)    
Predicted Functional Partners:
pglC
Galactosyltransferase; Pfam match to PF02397.7 Bac_transf.
  
 0.990
pglF
UDP-GlcNAc C4,6 dehydratase; Pfam match to PF02719.6 Polysacc_synt_2.
 
  
 0.975
pglE
UDP-4-keto-6-deoxy-GlcNAc C4 aminotransferase; Pfam match to PF01041.8 DegT_DnrJ_EryC1; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.974
pglD
UDP-4-amino-sugar N-acetyltransferase.
 
  
 0.973
pglK
ABC transporter, ATP-binding protein/permease, glycan transport; Pfam match to PF00005.18 ABC_tran.
 
 
 0.968
pglJ
GalNAc alpha-1,4-transferase; Pfam match to PF00534.11 Glycos_transf_1.
 
   
0.917
pglH
GalNAc alpha-1,4-transferase; Pfam match to PF00534.11 Glycos_transf_1.
 
   
0.913
galE
UDP-glucose 4-epimerase; Pfam match to PF01370.12 Epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.811
pglB
Oligosaccharide transferase to N-glycosylate proteins; Oligosaccharyl transferase (OST) that catalyzes the initial transfer of a defined glycan (GalNAc(2)GlcGalNAc(3)Bac(NAc)(2) in eubacteria, where Bac(NAc)(2) is di-N-acetyl bacillosamine) from the lipid carrier undecaprenol-pyrophosphate to an asparagine residue within an Asp/Glu-Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.
     
 0.808
wlaX
Conserved hypothetical protein, putative polysaccharide biosynthesis protein.
       0.660
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.