STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheYChemotaxis protein CheY; Pfam match to PF00072.15 Response_reg. (125 aa)    
Predicted Functional Partners:
cheA
Chemotaxis protein CheA; Pfam matches to PF01627.14 Hpt, and to PF02895.5 H-kinase_dim.
 
0.974
Cla_1204
MCP-domain signal transduction protein; Pfam matches to PF08447.2 PAS_3, and to PF08447.2 PAS_3.
 
 0.953
Cla_0087
MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.
  
  0.937
cheW
Chemotaxis protein CheW; Pfam match to PF01584.10 CheW.
  
 
 0.936
Cla_1499
MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal.
  
  0.936
Cla_0141
MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.
  
  0.934
Cla_1331
MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal.
  
  0.933
Cla_0383
MCP-domain signal transduction protein; Pfam matches to PF02743.9 Cache_1, and to PF00672.16 HAMP.
  
  0.932
Cla_0544
MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal.
  
  0.932
Cla_1546
MCP-domain signal transduction protein; Pfam matches to PF02743.9 Cache_1, and to PF00015.12 MCPsignal.
  
  0.932
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.