STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1274Conserved hypothetical protein. (136 aa)    
Predicted Functional Partners:
cheV
Chemotaxis protein CheV; Pfam matches to PF01584.10 CheW, and to PF00072.15 Response_reg.
  
 
 0.992
cheB
Protein-glutamate methylesterase; Pfam match to PF01339.8 CheB_methylest.
  
 
 0.962
fliY
Flagellar motor switch protein FliY; Pfam match to PF01052.11 SpoA.
  
 
 0.953
flgE1
Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.
  
  
 0.925
cheW
Chemotaxis protein CheW; Pfam match to PF01584.10 CheW.
  
 
 0.887
Cla_0042
Conserved hypothetical protein.
  
 
 0.865
motB
Flagellar motor component MotB; Pfam match to PF00691.11 OmpA.
  
  
 0.804
fliS
Flagellar protein FliS; Pfam match to PF02561.5 FliS.
  
  
 0.802
fliD
Flagellar filament cap protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.802
fliM
Flagellar motor switch protein FliM; Pfam match to PF02154.6 FliM.
  
  
 0.801
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.