Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cla_1280Conserved hypothetical protein, putative organic solvent tolerance protein; Pfam match to PF05494.3 Tol_Tol_Ttg2. (189 aa)    
Predicted Functional Partners:
Cla_1281
Conserved hypothetical protein, VacJ family; Pfam match to PF04333.4 VacJ.
 
 
 
 0.974
iamB
Putative ABC transporter, permease protein (DUF140 domain protein); Pfam match to PF02405.7 DUF140.
  
 
 0.973
Cla_0119
Putative ABC transporter, periplasmic substrate-binding protein; Pfam match to PF02470.11 MCE.
  
 0.947
iamA
Putative ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
  
 
 0.874
Cla_1279
Conserved hypothetical integral membrane protein; Pfam match to PF02460.9 Patched.
 
     0.851
Cla_0912
Conserved hypothetical protein.
 
 
 0.799
Cla_1283
Conserved hypothetical protein.
   
   0.615
modA
Molybdenum ABC transporter, periplasmic molybdate-binding protein; Pfam match to PF01547.16 SBP_bac_1.
       0.600
modC
Molybdenum ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
       0.596
Cla_1119
Conserved hypothetical protein.
  
     0.458
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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