STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1281Conserved hypothetical protein, VacJ family; Pfam match to PF04333.4 VacJ. (228 aa)    
Predicted Functional Partners:
Cla_1280
Conserved hypothetical protein, putative organic solvent tolerance protein; Pfam match to PF05494.3 Tol_Tol_Ttg2.
 
 
 
 0.949
Cla_1279
Conserved hypothetical integral membrane protein; Pfam match to PF02460.9 Patched.
 
     0.860
modA
Molybdenum ABC transporter, periplasmic molybdate-binding protein; Pfam match to PF01547.16 SBP_bac_1.
       0.563
Cla_1283
Conserved hypothetical protein.
       0.563
modC
Molybdenum ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
       0.563
iamB
Putative ABC transporter, permease protein (DUF140 domain protein); Pfam match to PF02405.7 DUF140.
     
 0.497
Cla_0917
Outer membrane efflux protein; Pfam match to PF02321.9 OEP.
  
   
 0.490
lptD
Conserved hypothetical protein, putative organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.486
pbpC
Penicillin-binding protein 2; Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase.
  
     0.403
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.