STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selAL-seryl-tRNA(SeC) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (443 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase (possible start at 335663); Pfam match to PF02769.13 AIRS_C.
 
  
 0.984
selB
Selenocysteine-specific elongation factor; Pfam matches to PF00009.18 GTP_EFTU, and to PF03144.16 GTP_EFTU_D2.
 
  
 0.966
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.923
yedF
Putative transcriptional regulator; Pfam match to PF01206.8 SirA; Belongs to the sulfur carrier protein TusA family.
 
  
 0.767
Cla_1288
Conserved hypothetical protein.
       0.669
Cla_1289
Conserved hypothetical lipoprotein.
       0.620
Cla_1285
Iron-sulfur cluster-binding domain protein, putative ferridoxin; Pfam match to PF00037.18 Fer4.
       0.573
ktrA
TRK system potassium uptake protein TrkA, putative; Pfam match to PF02254.9 TrkA_N.
   
    0.541
kefB
Sodium/hydrogen exchanger family protein; Pfam matches to PF00999.12 Na_H_Exchanger, and to PF02254.9 TrkA_N; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
    0.541
Cla_1030
Conserved hypothetical protein (TrkA domain protein); Pfam matches to PF07885.7 Ion_trans_2, and to PF02254.9 TrkA_N.
   
    0.541
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.