STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
selAL-seryl-tRNA(SeC) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (443 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase (possible start at 335663); Pfam match to PF02769.13 AIRS_C.
 
  
 0.985
selB
Selenocysteine-specific elongation factor; Pfam matches to PF00009.18 GTP_EFTU, and to PF03144.16 GTP_EFTU_D2.
 
  
 0.975
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.934
yedF
Putative transcriptional regulator; Pfam match to PF01206.8 SirA; Belongs to the sulfur carrier protein TusA family.
 
  
 0.822
Cla_1288
Conserved hypothetical protein.
       0.688
Cla_1285
Iron-sulfur cluster-binding domain protein, putative ferridoxin; Pfam match to PF00037.18 Fer4.
       0.638
Cla_1419
Tetrapyrrole methylase family protein; Pfam match to PF00590.11 TP_methylase.
      
 0.632
Cla_1289
Conserved hypothetical lipoprotein.
       0.627
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
      
 0.615
lon
DNA-binding, ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
      
 0.596
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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