Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cla_1294Conserved hypothetical protein; Pfam match to PF09312.2 SurA_N. (275 aa)    
Predicted Functional Partners:
mez
Malate oxidoreductase; Pfam matches to PF00390.10 malic, and to PF03949.6 Malic_M.
       0.659
gltX2
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.659
atpF
ATP synthase F0 sector, B' subunit; Pfam match to PF00430.9 ATP-synt_B; Belongs to the ATPase B chain family.
  
    0.650
mqnA
Conserved hypothetical protein (DUF178 domain protein); Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).
 
     0.637
ybgF
Conserved hypothetical protein.
  
   0.597
Cla_1534
Conserved hypothetical protein.
  
     0.583
pflB
Conserved hypothetical integral membrane protein (TPR domain protein); Pfam matches to PF00515.19 TPR_1, and to PF00515.19 TPR_1.
  
 
   0.564
Cla_1363
Conserved hypothetical integral membrane protein; Pfam match to PF03739.5 YjgP_YjgQ.
  
     0.543
bamA
Conserved hypothetical protein, putative outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.504
Cla_1496
Conserved hypothetical protein.
 
     0.479
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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