STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
acpP3Acyl carrier protein, putative. (72 aa)    
Predicted Functional Partners:
acpP2
Acyl carrier protein, putative.
    
  0.980
fabH1
3-oxoacyl-(acyl carrier protein) synthase III; Pfam matches to PF08545.1 ACP_syn_III, and to PF08541.1 ACP_syn_III_C.
  
 
 0.903
acpP1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
     
  0.900
aas
Pfam matches to PF07690.7 MFS_1, and to PF01553.12 Acyltransferase.
  
 
 0.856
pseC
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Pfam match to PF01041.8 DegT_DnrJ_EryC1; Belongs to the DegT/DnrJ/EryC1 family.
  
   0.824
fabD
Malonyl CoA-acyl carrier protein transacylase.
  
 0.822
Cla_1304
Conserved hypothetical protein, putative HAD superfamily hydrolase.
       0.822
Cla_1300
Conserved hypothetical protein.
       0.820
Cla_1303
Conserved hypothetical protein, methyltransferase type 12 domain; Pfam match to PF08242.3 Methyltransf_12.
  
    0.820
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
 0.818
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.