Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cla_1312Conserved hypothetical protein, formyltransferase domain protein; Pfam match to PF00551.10 Formyl_trans_N. (238 aa)    
Predicted Functional Partners:
metS
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
 
 0.925
Cla_1309
Conserved hypothetical protein.
       0.773
Cla_1310
Conserved hypothetical protein.
       0.773
Cla_1311
Conserved hypothetical protein, putative amino acid adenylation domain protein; Pfam match to PF00501.19 AMP-binding.
       0.773
acpP4
Acyl carrier protein, putative.
       0.737
Cla_1314
3-oxoacyl-(acyl carrier protein) synthase III FabH2, putative.
       0.737
Cla_0944
NOL1/NOP2/sun family protein; Pfam match to PF01189.8 Nol1_Nop2_Fmu; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.653
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
  
 0.593
Cla_1307
Conserved hypothetical protein.
       0.555
Cla_1308
Conserved hypothetical protein.
       0.555
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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