Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pseFCMP-N-acetylneuraminic acid synthetase; Pfam match to PF02348.10 CTP_transf_3. (231 aa)    
Predicted Functional Partners:
pseI
N-acetylneuraminic acid synthetase; Pfam matches to PF03102.5 NeuB, and to PF08666.3 SAF.
 
 
 0.978
pseG
Nucleotidase specific for PseC product, UDP-4-amino-4,6-dideoxy-beta-L-AltNAc.
 
   
 0.950
pseH
N-acetyltransferase specific for PseC product, UDP-4-amino-4,6-dideoxy-beta-L-AltNAc; Pfam match to PF00583.15 Acetyltransf_1.
     
 0.839
Cla_1325
Conserved hypothetical protein, possible N-acetyltransferase PseH; Pfam match to PF00583.15 Acetyltransf_1.
     
 0.785
Cla_1323
Conserved hypothetical protein, putative formyltransferase.
       0.784
Cla_1324
LmbE-like protein; Pfam match to PF02585.8 PIG-L.
       0.783
pseB
UDP-GlcNAc C6-dehydratase/C4-reductase; Pfam match to PF02719.6 Polysacc_synt_2.
  
  
 0.754
ptmC
Flagellin modification protein PtmC, putative N-acetylneuraminic acid synthetase; Pfam match to PF03102.5 NeuB.
 
  
 0.682
msbA
ABC transporter, ATP-binding protein/permease MsbA, putative; Pfam matches to PF00664.14 ABC_membrane, and to PF00005.18 ABC_tran.
     
 0.590
Cla_1318
Hypothetical protein.
       0.557
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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