Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pseHN-acetyltransferase specific for PseC product, UDP-4-amino-4,6-dideoxy-beta-L-AltNAc; Pfam match to PF00583.15 Acetyltransf_1. (163 aa)    
Predicted Functional Partners:
pseG
Nucleotidase specific for PseC product, UDP-4-amino-4,6-dideoxy-beta-L-AltNAc.
 
 
 0.997
Cla_1325
Conserved hypothetical protein, possible N-acetyltransferase PseH; Pfam match to PF00583.15 Acetyltransf_1.
 
  
 
0.981
pseC
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Pfam match to PF01041.8 DegT_DnrJ_EryC1; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.971
Cla_1323
Conserved hypothetical protein, putative formyltransferase.
    
  0.905
pseI
N-acetylneuraminic acid synthetase; Pfam matches to PF03102.5 NeuB, and to PF08666.3 SAF.
 
 
 0.899
pseF
CMP-N-acetylneuraminic acid synthetase; Pfam match to PF02348.10 CTP_transf_3.
     
 0.839
Cla_1324
LmbE-like protein; Pfam match to PF02585.8 PIG-L.
       0.785
pseB
UDP-GlcNAc C6-dehydratase/C4-reductase; Pfam match to PF02719.6 Polysacc_synt_2.
 
   
 0.765
maf5
Motility accessory factor; Pfam match to PF01973.9 DUF115.
  
   
 0.739
maf2
Motility accessory factor; Pfam match to PF01973.9 DUF115.
 
   
 0.703
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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