STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1325Conserved hypothetical protein, possible N-acetyltransferase PseH; Pfam match to PF00583.15 Acetyltransf_1. (154 aa)    
Predicted Functional Partners:
pseG
Nucleotidase specific for PseC product, UDP-4-amino-4,6-dideoxy-beta-L-AltNAc.
 
 
 0.991
pseH
N-acetyltransferase specific for PseC product, UDP-4-amino-4,6-dideoxy-beta-L-AltNAc; Pfam match to PF00583.15 Acetyltransf_1.
 
  
 
0.978
pseC
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Pfam match to PF01041.8 DegT_DnrJ_EryC1; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.918
Cla_1323
Conserved hypothetical protein, putative formyltransferase.
       0.786
Cla_1324
LmbE-like protein; Pfam match to PF02585.8 PIG-L.
       0.784
pseF
CMP-N-acetylneuraminic acid synthetase; Pfam match to PF02348.10 CTP_transf_3.
     
 0.779
trxC
Possible periplasmic thioredoxin; Pfam match to PF00085.11 Thioredoxin.
  
     0.686
Cla_0114
Conserved hypothetical protein.
  
     0.680
Cla_0819
Conserved hypothetical protein.
 
     0.643
Cla_0337
Conserved hypothetical protein, predicted ATP/GTP-binding protein.
  
     0.627
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.