STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pseAPseudaminic acid biosynthesis protein PseA. (378 aa)    
Predicted Functional Partners:
hisF2
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
   0.921
hisH2
Imidazoleglycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
 
    0.877
maf
Septum formation protein Maf; Pfam match to PF02545.5 Maf; Belongs to the Maf family.
     
 0.781
ptmB
Flagellin modification protein PtmB, acylneuraminate cytidylyltransferase; Pfam match to PF02348.10 CTP_transf_3.
 
   
 0.679
ptmA
Flagellin modification protein PtmA, putative oxidoreductase.
      
 0.653
maf2
Motility accessory factor; Pfam match to PF01973.9 DUF115.
      
 0.609
maf5
Motility accessory factor; Pfam match to PF01973.9 DUF115.
      
 0.609
kpsM
Capsular polysaccharide ABC transporter, permease protein; Pfam match to PF01061.15 ABC2_membrane.
      
 0.598
ptmF
Flagellin modification protein PtmF.
 
    0.591
pglE
UDP-4-keto-6-deoxy-GlcNAc C4 aminotransferase; Pfam match to PF01041.8 DegT_DnrJ_EryC1; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.591
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.