STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ahpCAlkyl hydroperoxide reductase C22 protein, AhpC/TsaA family; Pfam match to PF00578.12 AhpC-TSA. (198 aa)    
Predicted Functional Partners:
perR
Peroxide stress regulator; Pfam match to PF01475.10 FUR; Belongs to the Fur family.
  
  
 0.935
trxB
Thioredoxin reductase; Pfam match to PF07992.5 Pyr_redox_2.
  
 
 0.922
trxC
Possible periplasmic thioredoxin; Pfam match to PF00085.11 Thioredoxin.
  
 0.862
Cla_1163
Conserved hypothetical protein, possible lipoprotein thioredoxin.
  
 0.862
Cla_1212
Conserved hypothetical lipoprotein; Pfam match to PF00578.12 AhpC-TSA.
  
 0.862
sodB
Superoxide dismutase (Fe); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.849
rbr
Rubrerythrin; Pfam matches to PF06397.3 Desulfoferrod_N, and to PF02915.8 Rubrerythrin.
  
  
 0.802
Cla_0922
Conserved hypothetical protein, putative pyridine nucleotide-disulphide oxidoreductase; Pfam match to PF00070.18 Pyr_redox.
  
 
 0.790
katA
Catalase; Pfam match to PF00199.10 Catalase.
   
 
 0.785
Cla_0248
Conserved hypothetical protein, putative bacterioferritin; Pfam match to PF00210.15 Ferritin; Belongs to the Dps family.
  
  
 0.710
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.