STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
peb3Major antigenic peptide PEB3. (249 aa)    
Predicted Functional Partners:
peb4
Major antigenic peptide PEB-cell binding factor; Pfam match to PF00639.12 Rotamase.
    
 
 0.673
purB2
Pfam match to PF00206.11 Lyase_1; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
      
 0.658
metC
Cystathionase beta-lyase; Pfam match to PF01053.11 Cys_Met_Meta_PP.
      
 0.656
Cla_1382
HesA/MoeB/ThiF family protein; Pfam match to PF00899.12 ThiF.
 
     0.600
p19
19 kDa periplasmic protein.
      
 0.581
Cla_1378
Putative C4-dicarboxylate transporter; Pfam match to PF03606.6 DcuC.
       0.570
pepE
Pfam match to PF03575.8 Peptidase_S51.
       0.570
surE
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.545
cadF
Outer membrane fibronectin-binding protein; Pfam match to PF00691.11 OmpA.
  
   
 0.507
Cla_1383
Conserved hypothetical protein, possible beta-lactamase; Pfam match to PF00905.13 Transpeptidase.
       0.446
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.