STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1382HesA/MoeB/ThiF family protein; Pfam match to PF00899.12 ThiF. (217 aa)    
Predicted Functional Partners:
surE
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.804
Cla_1383
Conserved hypothetical protein, possible beta-lactamase; Pfam match to PF00905.13 Transpeptidase.
       0.664
peb3
Major antigenic peptide PEB3.
 
     0.601
Cla_1384
Conserved hypothetical protein, putative metal-dependent membrane protease; Pfam match to PF02517.7 Abi.
       0.600
Cla_1378
Putative C4-dicarboxylate transporter; Pfam match to PF03606.6 DcuC.
       0.445
pepE
Pfam match to PF03575.8 Peptidase_S51.
       0.433
Cla_1005
Peptidase, U32 family; Pfam match to PF01136.10 Peptidase_U32.
  
     0.401
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.