STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1384Conserved hypothetical protein, putative metal-dependent membrane protease; Pfam match to PF02517.7 Abi. (273 aa)    
Predicted Functional Partners:
Cla_1383
Conserved hypothetical protein, possible beta-lactamase; Pfam match to PF00905.13 Transpeptidase.
       0.746
surE
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.600
Cla_1382
HesA/MoeB/ThiF family protein; Pfam match to PF00899.12 ThiF.
       0.600
sdaC
L-serine transporter.
  
     0.585
rdxA
Nitroreductase; Pfam match to PF00881.15 Nitroreductase.
  
  
 0.585
mnmC
Conserved hypothetical protein (DUF752 domain protein); Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
 
    0.569
dsbA
Thiol:disulfide interchange protein, DsbA family.
  
     0.540
peb3
Major antigenic peptide PEB3.
       0.433
Cla_0114
Conserved hypothetical protein.
  
     0.429
Cla_0843
Conserved hypothetical protein (DUF1353 domain protein); Pfam match to PF07087.2 DUF1353.
  
     0.424
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.