STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1386Conserved hypothetical protein (DUF452 domain protein); Pfam match to PF04301.4 DUF452. (204 aa)    
Predicted Functional Partners:
bioF
8-amino-7-oxononanoate synthase; Pfam match to PF00155.12 Aminotran_1_2.
 
 
  0.989
bioC
Biotin synthesis protein BioC.
 
    0.947
Cla_1388
Conserved hypothetical protein, tetratricopeptide repeat domain protein family; Hydrolyzes 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives.
       0.804
bioA
Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; Pfam match to PF00202.12 Aminotran_3; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.721
bioD
Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
 
    0.550
Cla_1243
Glycosyltransferase; Pfam match to PF05704.3 Caps_synth.
  
     0.539
Cla_1163
Conserved hypothetical protein, possible lipoprotein thioredoxin.
  
     0.537
Cla_0731
Conserved hypothetical protein, putative periplasmic protein.
  
     0.515
Cla_1548
Conserved hypothetical protein.
  
     0.510
Cla_0716
Conserved hypothetical protein.
  
     0.448
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.