STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cla_1388Conserved hypothetical protein, tetratricopeptide repeat domain protein family; Hydrolyzes 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives. (184 aa)    
Predicted Functional Partners:
flgE1
Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.
    
 
 0.868
flgC
Flagellar proximal rod protein FlgC; Pfam matches to PF00460.11 Flg_bb_rod, and to PF06429.4 DUF1078; Belongs to the flagella basal body rod proteins family.
   
 
 0.834
Cla_1386
Conserved hypothetical protein (DUF452 domain protein); Pfam match to PF04301.4 DUF452.
       0.786
bioF
8-amino-7-oxononanoate synthase; Pfam match to PF00155.12 Aminotran_1_2.
       0.786
hisS
histidyl-tRNA synthetase; Pfam match to PF00587.16 tRNA-synt_2b.
    
  0.780
bioC
Biotin synthesis protein BioC.
       0.773
Cla_0570
Peptidase, M48 family; Pfam match to PF01435.9 Peptidase_M48.
   
 
 0.744
bioA
Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; Pfam match to PF00202.12 Aminotran_3; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
    0.563
Cla_1405
Conserved hypothetical transmembrane protein (SPFH domain / Band 7 family); Pfam match to PF01145.16 Band_7.
    
 0.560
Cla_0877
Conserved hypothetical protein, putative ATPase, AAA family; Pfam match to PF00004.20 AAA.
 
 
 0.557
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.