STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ilvEBranched-chain amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (304 aa)    
Predicted Functional Partners:
ilvD
Dihydroxyacid dehydratase; Pfam match to PF00920.12 ILVD_EDD; Belongs to the IlvD/Edd family.
  
 0.980
ilvA
Threonine dehydratase; Pfam match to PF00291.16 PALP.
  
 
 0.904
Cla_0768
Conserved hypothetical protein.
     
  0.900
hom
Homoserine dehydrogenase; Pfam matches to PF03447.7 NAD_binding_3, and to PF00742.10 Homoserine_dh.
  
 
 0.857
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
  
 
 0.825
Cla_1405
Conserved hypothetical transmembrane protein (SPFH domain / Band 7 family); Pfam match to PF01145.16 Band_7.
  
    0.791
Cla_1406
Conserved hypothetical integral membrane protein.
       0.745
Cla_1407
Conserved hypothetical integral membrane protein.
       0.745
bcp
Bacterioferritin comigratory protein (AhpC/Tsa family); Pfam match to PF00578.12 AhpC-TSA.
  
    0.728
Cla_1401
Conserved hypothetical protein (DUF208 domain protein); Pfam match to PF02677.5 DUF208.
       0.619
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.