STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cla_1405Conserved hypothetical transmembrane protein (SPFH domain / Band 7 family); Pfam match to PF01145.16 Band_7. (356 aa)    
Predicted Functional Partners:
ilvE
Branched-chain amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
    0.806
Cla_1406
Conserved hypothetical integral membrane protein.
     
 0.792
Cla_1407
Conserved hypothetical integral membrane protein.
       0.787
Cla_0732
Conserved hypothetical integral membrane protein, Rhomboid family; Pfam match to PF01694.13 Rhomboid.
   
 0.784
ftsH1
Cell division protein FtsH; Pfam match to PF00004.20 AAA; Belongs to the AAA ATPase family.
   
 0.759
ftsH2
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.759
mreC
Rod shape-determining protein MreC.
 
     0.713
Cla_1401
Conserved hypothetical protein (DUF208 domain protein); Pfam match to PF02677.5 DUF208.
 
     0.685
Cla_0687
Peptidase, M16 family; Pfam match to PF05193.12 Peptidase_M16_C.
  
 0.676
ctsW
Conserved hypothetical protein, possible purine/pyrimidine phosphoribosyltransferase.
 
    0.675
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.