STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1413Conserved hypothetical protein (UPF0102 domain protein); Pfam match to PF02021.8 UPF0102; Belongs to the UPF0102 family. (112 aa)    
Predicted Functional Partners:
hom
Homoserine dehydrogenase; Pfam matches to PF03447.7 NAD_binding_3, and to PF00742.10 Homoserine_dh.
       0.804
aspC
Aminotransferase (AspC family); Pfam match to PF00155.12 Aminotran_1_2.
       0.804
Cla_1416
Conserved hypothetical protein.
       0.791
Cla_1417
Conserved hypothetical integral membrane protein.
       0.791
Cla_1418
Conserved hypothetical protein, probable rRNA methyltransferase, TrmH family; Pfam matches to PF08032.3 SpoU_sub_bind, and to PF00588.10 SpoU_methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.791
Cla_1419
Tetrapyrrole methylase family protein; Pfam match to PF00590.11 TP_methylase.
 
     0.782
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
       0.752
trx
Thioredoxin; Pfam match to PF00085.11 Thioredoxin; Belongs to the thioredoxin family.
  
    0.681
RsmE
Conserved hypothetical protein (DUF558 domain protein); Pfam match to PF04452.5 Methyltrans_RNA.
       0.595
queD
Conserved hypothetical protein, putative 6-pyruvoyl tetrahydropterin synthase.
  
    0.576
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.