STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cla_1417Conserved hypothetical integral membrane protein. (292 aa)    
Predicted Functional Partners:
mreB
Rod shape-determining protein MreB; Pfam match to PF06723.4 MreB_Mbl.
   
 
 0.873
pgsA
CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyltransferase; Pfam match to PF01066.12 CDP-OH_P_transf; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.867
Cla_1416
Conserved hypothetical protein.
       0.825
Cla_1418
Conserved hypothetical protein, probable rRNA methyltransferase, TrmH family; Pfam matches to PF08032.3 SpoU_sub_bind, and to PF00588.10 SpoU_methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.825
Cla_1413
Conserved hypothetical protein (UPF0102 domain protein); Pfam match to PF02021.8 UPF0102; Belongs to the UPF0102 family.
       0.812
hom
Homoserine dehydrogenase; Pfam matches to PF03447.7 NAD_binding_3, and to PF00742.10 Homoserine_dh.
       0.812
aspC
Aminotransferase (AspC family); Pfam match to PF00155.12 Aminotran_1_2.
       0.812
Cla_1419
Tetrapyrrole methylase family protein; Pfam match to PF00590.11 TP_methylase.
       0.787
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
       0.787
trx
Thioredoxin; Pfam match to PF00085.11 Thioredoxin; Belongs to the thioredoxin family.
       0.695
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.