Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dppDPeptide ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran. (257 aa)    
Predicted Functional Partners:
dppC
Peptide ABC transporter, permease protein; Pfam match to PF00528.13 BPD_transp_1.
 0.999
dppF
Peptide ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
  
 
0.998
dppB
Peptide ABC transporter, permease protein; Pfam match to PF00528.13 BPD_transp_1.
 
 0.998
dppA
Peptide ABC transporter, periplasmic substrate-binding protein; Pfam match to PF00496.13 SBP_bac_5.
 
 0.996
Cla_1451
BCCT (betaine/carnitine/choline) family transporter; Pfam match to PF02028.8 BCCT; Belongs to the BCCT transporter (TC 2.A.15) family.
    
  0.962
modC
Molybdenum ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
    
0.918
ftsE
Cell division ATP-binding protein FtsE; Pfam match to PF00005.18 ABC_tran.
 
    
0.707
livG
Branched-chain amino acid ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
     0.562
nuoD
NADH-quinone oxidoreductase, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
       0.522
nuoC
NADH-quinone oxidoreductase, C subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 30 kDa subunit family.
       0.522
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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