STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppAPeptide ABC transporter, periplasmic substrate-binding protein; Pfam match to PF00496.13 SBP_bac_5. (511 aa)    
Predicted Functional Partners:
dppC
Peptide ABC transporter, permease protein; Pfam match to PF00528.13 BPD_transp_1.
 
 0.999
dppB
Peptide ABC transporter, permease protein; Pfam match to PF00528.13 BPD_transp_1.
 0.999
dppF
Peptide ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
 0.997
dppD
Peptide ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
 0.996
Cla_1451
BCCT (betaine/carnitine/choline) family transporter; Pfam match to PF02028.8 BCCT; Belongs to the BCCT transporter (TC 2.A.15) family.
    
  0.968
por
Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR.
  
    0.920
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.686
pstS
Phosphate ABC transporter, periplasmic phosphate-binding protein.
      
 0.658
hslU
Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.
      
 0.652
gapA
Glyceraldehyde-3-phosphate dehydrogenase; Pfam matches to PF00044.15 Gp_dh_N, and to PF02800.11 Gp_dh_C; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.651
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.