STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1451BCCT (betaine/carnitine/choline) family transporter; Pfam match to PF02028.8 BCCT; Belongs to the BCCT transporter (TC 2.A.15) family. (647 aa)    
Predicted Functional Partners:
dppA
Peptide ABC transporter, periplasmic substrate-binding protein; Pfam match to PF00496.13 SBP_bac_5.
    
  0.968
dppB
Peptide ABC transporter, permease protein; Pfam match to PF00528.13 BPD_transp_1.
  
 
  0.967
dppC
Peptide ABC transporter, permease protein; Pfam match to PF00528.13 BPD_transp_1.
    
  0.964
dppF
Peptide ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
    
  0.962
dppD
Peptide ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
    
  0.962
lctP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
     
 0.450
lldG
Conserved hypothetical protein (DUF162 domain protein); Pfam match to PF02589.6 DUF162.
       0.446
lldF
Putative iron-sulfur cluster binding protein; Pfam match to PF02589.6 DUF162.
       0.446
lldE
Cysteine-rich domain protein; Pfam matches to PF02754.7 CCG, and to PF02754.7 CCG.
       0.445
nuoL
NADH-quinone oxidoreductase, L subunit; Pfam matches to PF00662.11 Oxidored_q1_N, and to PF00361.11 Oxidored_q1.
     
 0.442
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.