Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cla_1457Type IIS restriction/modification enzyme; Fusion of CJ0031 and CJ0032. (1256 aa)    
Predicted Functional Partners:
Cla_1456
Conserved hypothetical integral membrane protein.
       0.783
Cla_0114
Conserved hypothetical protein.
  
     0.677
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
  
   
 0.645
Cla_1243
Glycosyltransferase; Pfam match to PF05704.3 Caps_synth.
  
     0.609
Cla_0912
Conserved hypothetical protein.
  
     0.602
Cla_1303
Conserved hypothetical protein, methyltransferase type 12 domain; Pfam match to PF08242.3 Methyltransf_12.
  
     0.592
torC
Trimethylamine N-oxide reductase, cytochrome c-type subunit.
 
     0.559
Cla_0843
Conserved hypothetical protein (DUF1353 domain protein); Pfam match to PF07087.2 DUF1353.
  
     0.498
Cla_0911
Chemotaxis protein MotB, putative; Pfam match to PF00691.11 OmpA.
  
     0.497
torA
Trimethylamine N-oxide reductase, catalytic subunit; Pfam matches to PF00384.13 Molybdopterin, and to PF01568.12 Molydop_binding; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.495
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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