STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
iscSCysteine desulfurase/aminotransferase, IscS/NifS family; Pfam match to PF00266.10 Aminotran_5. (392 aa)    
Predicted Functional Partners:
iscU
NifU-like protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 0.999
Cla_0942
Transcriptional regulator, BadM/Rrf2 family; Pfam match to PF02082.11 Rrf2.
  
  
 0.911
selD
Selenide, water dikinase (possible start at 335663); Pfam match to PF02769.13 AIRS_C.
  
 
 0.893
yedF
Putative transcriptional regulator; Pfam match to PF01206.8 SirA; Belongs to the sulfur carrier protein TusA family.
   
 
 0.824
fdhU
Conserved hypothetical protein, SirA family; Pfam match to PF01206.8 SirA; Belongs to the sulfur carrier protein TusA family.
   
 
 0.824
petA
Ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit; Pfam match to PF00355.17 Rieske.
   
 0.788
nhaA1
Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
    
  0.766
clpP
ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
 
 0.659
dnaK
Chaperone and heat shock protein 70; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.649
Cla_0110
Conserved hypothetical protein, NifU family protein; Pfam match to PF01106.8 NifU.
  
 
 0.603
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.