STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1492Conserved hypothetical protein. (347 aa)    
Predicted Functional Partners:
Cla_1496
Conserved hypothetical protein.
 
     0.798
Cla_0114
Conserved hypothetical protein.
  
     0.737
Cla_1491
Conserved hypothetical integral membrane protein (UPF0126 domain protein); Pfam matches to PF03458.4 UPF0126, and to PF03458.4 UPF0126.
       0.709
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
  
     0.685
Cla_0255
Conserved hypothetical integral membrane protein.
  
     0.670
Cla_1243
Glycosyltransferase; Pfam match to PF05704.3 Caps_synth.
  
     0.669
Cla_1174
Conserved hypothetical integral membrane protein.
  
     0.665
Cla_0225
Conserved hypothetical protein, putative endonuclease.
  
     0.663
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
       0.654
rnc
Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.
       0.654
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.