Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rnc | rplM | Cla_1494 | Cla_0384 | Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.925 |
| rnc | rplQ | Cla_1494 | Cla_0096 | Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. | Pfam match to PF01196.10 Ribosomal_L17. | 0.913 |
| rnc | rplS | Cla_1494 | Cla_0992 | Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.943 |
| rnc | rpmA | Cla_1494 | Cla_0184 | Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. | Pfam match to PF01016.10 Ribosomal_L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.922 |
| rnc | rpmF | Cla_1494 | Cla_1336 | Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. | Pfam match to PF01783.14 Ribosomal_L32p; Belongs to the bacterial ribosomal protein bL32 family. | 0.922 |
| rnc | rpsB | Cla_1494 | Cla_1094 | Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 0.917 |
| rnc | rpsF | Cla_1494 | Cla_0951 | Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.921 |
| rnc | rpsI | Cla_1494 | Cla_0385 | Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. | Pfam match to PF00380.10 Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family. | 0.931 |
| rnc | rpsO | Cla_1494 | Cla_0943 | Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.919 |
| rnc | rpsP | Cla_1494 | Cla_0996 | Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. | Pfam match to PF00886.10 Ribosomal_S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.919 |
| rplM | rnc | Cla_0384 | Cla_1494 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. | 0.925 |
| rplM | rplQ | Cla_0384 | Cla_0096 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam match to PF01196.10 Ribosomal_L17. | 0.992 |
| rplM | rplS | Cla_0384 | Cla_0992 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.990 |
| rplM | rpmA | Cla_0384 | Cla_0184 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam match to PF01016.10 Ribosomal_L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.990 |
| rplM | rpmF | Cla_0384 | Cla_1336 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam match to PF01783.14 Ribosomal_L32p; Belongs to the bacterial ribosomal protein bL32 family. | 0.988 |
| rplM | rpsB | Cla_0384 | Cla_1094 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 0.992 |
| rplM | rpsF | Cla_0384 | Cla_0951 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.989 |
| rplM | rpsI | Cla_0384 | Cla_0385 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam match to PF00380.10 Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family. | 0.998 |
| rplM | rpsO | Cla_0384 | Cla_0943 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.992 |
| rplM | rpsP | Cla_0384 | Cla_0996 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Pfam match to PF00886.10 Ribosomal_S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.990 |
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