rnc protein (Campylobacter lari) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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[Homology]

Score

rnc

Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm. (222 aa)

Predicted Functional Partners:

rplS

0.908

rnhA

0.884

rpmA

0.880

rplQ

0.878

rpmF

0.878

rplO

0.870

rpsI

0.868

rplC

0.863

rplP

0.863

rpsB

0.863

Your Current Organism:

Campylobacter lari

NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100

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structured XML interaction data, according to the 'PSI-MI' data standard

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... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rnc	rnhA	Cla_1494	Cla_1495	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.884
rnc	rplC	Cla_1494	Cla_0059	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	Pfam match to PF00297.13 Ribosomal_L3.	0.863
rnc	rplO	Cla_1494	Cla_0077	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.870
rnc	rplP	Cla_1494	Cla_0066	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.863
rnc	rplQ	Cla_1494	Cla_0096	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	Pfam match to PF01196.10 Ribosomal_L17.	0.878
rnc	rplS	Cla_1494	Cla_0992	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.908
rnc	rpmA	Cla_1494	Cla_0184	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	Pfam match to PF01016.10 Ribosomal_L27; Belongs to the bacterial ribosomal protein bL27 family.	0.880
rnc	rpmF	Cla_1494	Cla_1336	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	Pfam match to PF01783.14 Ribosomal_L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.878
rnc	rpsB	Cla_1494	Cla_1094	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family.	0.863
rnc	rpsI	Cla_1494	Cla_0385	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	Pfam match to PF00380.10 Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family.	0.868
rnhA	rnc	Cla_1495	Cla_1494	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	0.884
rplC	rnc	Cla_0059	Cla_1494	Pfam match to PF00297.13 Ribosomal_L3.	Ribonuclease III; Pfam matches to PF00636.17 Ribonuclease_3, and to PF00035.16 dsrm.	0.863
rplC	rplO	Cla_0059	Cla_0077	Pfam match to PF00297.13 Ribosomal_L3.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
rplC	rplP	Cla_0059	Cla_0066	Pfam match to PF00297.13 Ribosomal_L3.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rplC	rplQ	Cla_0059	Cla_0096	Pfam match to PF00297.13 Ribosomal_L3.	Pfam match to PF01196.10 Ribosomal_L17.	0.993
rplC	rplS	Cla_0059	Cla_0992	Pfam match to PF00297.13 Ribosomal_L3.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.987
rplC	rpmA	Cla_0059	Cla_0184	Pfam match to PF00297.13 Ribosomal_L3.	Pfam match to PF01016.10 Ribosomal_L27; Belongs to the bacterial ribosomal protein bL27 family.	0.986
rplC	rpmF	Cla_0059	Cla_1336	Pfam match to PF00297.13 Ribosomal_L3.	Pfam match to PF01783.14 Ribosomal_L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.972
rplC	rpsB	Cla_0059	Cla_1094	Pfam match to PF00297.13 Ribosomal_L3.	Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family.	0.988
rplC	rpsI	Cla_0059	Cla_0385	Pfam match to PF00297.13 Ribosomal_L3.	Pfam match to PF00380.10 Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family.	0.991