STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpC2Penicillin-binding protein 1C; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase. (734 aa)    
Predicted Functional Partners:
Cla_1501
Alpha-2-macroglobulin family N-terminal region domain protein; Pfam matches to PF01835.10 A2M_N, and to PF07703.5 A2M_N_2.
 
   
 0.960
pbpA
Penicillin-binding protein 1A; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase.
  
  
 
0.927
Cla_0602
Peptidase, M23/M37 family; Pfam match to PF01551.13 Peptidase_M23.
  
     0.592
Cla_1502
Conserved hypothetical protein.
       0.566
Cla_1220
Peptidase, M23/M37 family; Pfam match to PF01551.13 Peptidase_M23.
  
     0.509
Cla_1041
Peptidase, M23/M37 family; Pfam match to PF01551.13 Peptidase_M23.
  
     0.507
Cla_1503
Hypothetical protein.
       0.477
Cla_1499
MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal.
       0.459
Cla_0217
Peptidase, M23/M37 family; Pfam match to PF01551.13 Peptidase_M23.
  
     0.401
ftsW
Cell division protein, FtsW/RodA/SpoVE family; Pfam match to PF01098.10 FTSW_RODA_SPOVE; Belongs to the SEDS family.
  
   
 0.401
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.