Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pbpC2Penicillin-binding protein 1C; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase. (734 aa)    
Predicted Functional Partners:
Cla_1501
Alpha-2-macroglobulin family N-terminal region domain protein; Pfam matches to PF01835.10 A2M_N, and to PF07703.5 A2M_N_2.
 
   
 0.972
pbpB
Penicillin-binding protein; Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase.
  
  
 0.936
pbpA
Penicillin-binding protein 1A; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase.
  
  
0.928
pbpC
Penicillin-binding protein 2; Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase.
     
 0.910
Cla_1502
Conserved hypothetical protein.
       0.626
Cla_0602
Peptidase, M23/M37 family; Pfam match to PF01551.13 Peptidase_M23.
  
     0.592
Cla_1220
Peptidase, M23/M37 family; Pfam match to PF01551.13 Peptidase_M23.
  
     0.509
Cla_1041
Peptidase, M23/M37 family; Pfam match to PF01551.13 Peptidase_M23.
  
     0.507
Cla_1503
Hypothetical protein.
       0.498
Cla_1499
MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal.
       0.459
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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