STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cynTCarbonic anhydrase; Pfam match to PF00484.10 Pro_CA. (210 aa)    
Predicted Functional Partners:
cah
Conserved hypothetical protein, putative carbonic anhydrase; Pfam match to PF00194.12 Carb_anhydrase.
    
 0.923
Cla_1504
Conserved hypothetical integral membrane protein, mechanosensitive ion channel family; Pfam match to PF00924.9 MS_channel.
       0.825
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.654
Cla_1506
Conserved hypothetical integral membrane protein (UPF0005 domain protein); Pfam match to PF01027.11 UPF0005; Belongs to the BI1 family.
       0.630
dut
Deoxyuridine triphosphatase domain protein; Pfam match to PF08761.2 dUTPase_2.
      
 0.620
crcB
Putative camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
      
 0.620
clpA
ATP-dependent ClpAP protease, ATP-binding subunit ClpA; Pfam matches to PF00004.20 AAA, and to PF07724.5 AAA_2; Belongs to the ClpA/ClpB family.
      
 0.620
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
      
 0.618
recJ
single-stranded-DNA specific exonuclease; Pfam matches to PF01368.11 DHH, and to PF02272.10 DHHA1.
      
 0.605
ktrB
TRK system potassium uptake protein TrkB, putative; Pfam match to PF02386.7 TrkH.
     
 0.600
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.