fliK protein (Campylobacter lari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

fliK

Conserved hypothetical protein; Pfam match to PF02120.7 Flg_hook. (560 aa)

Predicted Functional Partners:

flgD

0.990

flgE1

0.969

fliQ

0.966

fliG

0.966

fliY

0.962

flgK

0.962

fliF

0.957

fliM

0.956

flgH

0.956

fliE

0.954

Your Current Organism:

Campylobacter lari

NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
flgD	flgE1	Cla_1519	Cla_0107	Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.	0.999
flgD	flgH	Cla_1519	Cla_0638	Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.964
flgD	flgK	Cla_1519	Cla_0396	Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar hook-associated protein FlgK; Pfam matches to PF00460.11 Flg_bb_rod, and to PF06429.4 DUF1078; Belongs to the flagella basal body rod proteins family.	0.974
flgD	fliE	Cla_1519	Cla_1067	Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar proximal rod protein FliE; Pfam match to PF02049.9 FliE.	0.972
flgD	fliF	Cla_1519	Cla_1358	Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar MS-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.963
flgD	fliG	Cla_1519	Cla_1357	Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar motor switch protein FliG; Pfam match to PF01706.7 FliG_C.	0.943
flgD	fliK	Cla_1519	Cla_1518	Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Conserved hypothetical protein; Pfam match to PF02120.7 Flg_hook.	0.990
flgD	fliM	Cla_1519	Cla_0237	Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar motor switch protein FliM; Pfam match to PF02154.6 FliM.	0.973
flgD	fliQ	Cla_1519	Cla_0155	Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar biosynthesis protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.957
flgD	fliY	Cla_1519	Cla_0238	Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar motor switch protein FliY; Pfam match to PF01052.11 SpoA.	0.982
flgE1	flgD	Cla_0107	Cla_1519	Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.	Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	0.999
flgE1	flgH	Cla_0107	Cla_0638	Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.	Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.998
flgE1	flgK	Cla_0107	Cla_0396	Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.	Flagellar hook-associated protein FlgK; Pfam matches to PF00460.11 Flg_bb_rod, and to PF06429.4 DUF1078; Belongs to the flagella basal body rod proteins family.	0.997
flgE1	fliE	Cla_0107	Cla_1067	Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.	Flagellar proximal rod protein FliE; Pfam match to PF02049.9 FliE.	0.997
flgE1	fliF	Cla_0107	Cla_1358	Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.	Flagellar MS-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.999
flgE1	fliG	Cla_0107	Cla_1357	Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.	Flagellar motor switch protein FliG; Pfam match to PF01706.7 FliG_C.	0.999
flgE1	fliK	Cla_0107	Cla_1518	Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.	Conserved hypothetical protein; Pfam match to PF02120.7 Flg_hook.	0.969
flgE1	fliM	Cla_0107	Cla_0237	Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.	Flagellar motor switch protein FliM; Pfam match to PF02154.6 FliM.	0.999
flgE1	fliQ	Cla_0107	Cla_0155	Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.	Flagellar biosynthesis protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.998
flgE1	fliY	Cla_0107	Cla_0238	Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.	Flagellar motor switch protein FliY; Pfam match to PF01052.11 SpoA.	0.999