STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1522Conserved hypothetical protein. (408 aa)    
Predicted Functional Partners:
ctsF
Putative type II protein secretion system F protein CtsF; Possible pseudogene; Pfam match to PF00482.14 GSPII_F.
  
  
 0.867
ctsE
Putative type II protein secretion system E protein CtsE; Pfam match to PF00437.11 GSPII_E.
  
  
 0.828
Cla_0433
Conserved hypothetical protein; Pfam match to PF07963.3 N_methyl.
  
  
 0.652
Cla_1183
N-terminal methylation domain protein; Pfam match to PF07963.3 N_methyl.
  
  
 0.652
ctsG
Putative Campylobacter transformation system protein CtsG; Pfam match to PF07963.3 N_methyl.
  
  
 0.652
Cla_1521
Conserved hypothetical protein.
       0.571
Cla_0977
Peptidase, A24 family; Pfam match to PF06750.4 DiS_P_DiS.
  
  
 0.547
ssb
Single-strand DNA binding protein; Pfam match to PF00436.16 SSB.
   
    0.531
Cla_1216
Conserved hypothetical protein, putative ComEC/Rec2-related protein domain protein; Pfam match to PF03772.7 Competence.
  
  
 0.508
ctsW
Conserved hypothetical protein, possible purine/pyrimidine phosphoribosyltransferase.
  
    0.503
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.