STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ficCell filamentation protein; Pfam match to PF02661.9 Fic. (202 aa)    
Predicted Functional Partners:
Cla_1524
ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran; Belongs to the ABC transporter superfamily.
       0.590
Cla_1525
ABC transporter, permease protein; Pfam matches to PF00528.13 BPD_transp_1, and to PF00528.13 BPD_transp_1.
       0.590
Cla_0087
MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.
      
 0.568
Cla_0105
MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.
      
 0.568
Cla_0141
MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.
      
 0.568
Cla_0383
MCP-domain signal transduction protein; Pfam matches to PF02743.9 Cache_1, and to PF00672.16 HAMP.
      
 0.568
Cla_0544
MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal.
      
 0.568
Cla_1032
MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.
      
 0.568
Cla_1331
MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal.
      
 0.568
Cla_1499
MCP-domain signal transduction protein; Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal.
      
 0.568
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.