STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1526ABC transporter, periplasmic binding protein; Pfam match to PF01547.16 SBP_bac_1. (334 aa)    
Predicted Functional Partners:
Cla_1525
ABC transporter, permease protein; Pfam matches to PF00528.13 BPD_transp_1, and to PF00528.13 BPD_transp_1.
 
 
 0.998
Cla_1524
ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran; Belongs to the ABC transporter superfamily.
 
 
 0.991
p19
19 kDa periplasmic protein.
   
  
 0.880
Cla_1170
Iron permease, FTR1 family; Pfam match to PF03239.5 FTR1.
   
    0.790
Cla_0339
Conserved hypothetical protein, pyridoxamine 5'-phosphate oxidase family; Pfam match to PF01243.11 Pyridox_oxidase.
   
    0.666
cgb
Conserved hypothetical protein, putative flavohemoprotein; Pfam match to PF00042.13 Globin; Belongs to the globin family.
  
    0.594
Cla_0408
Conserved hypothetical protein.
   
    0.578
trxB
Thioredoxin reductase; Pfam match to PF07992.5 Pyr_redox_2.
   
    0.567
fic
Cell filamentation protein; Pfam match to PF02661.9 Fic.
       0.560
Cla_1168
Conserved hypothetical integral membrane protein (YHS domain protein); Pfam match to PF04945.4 YHS.
  
    0.515
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.