STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cgbConserved hypothetical protein, putative flavohemoprotein; Pfam match to PF00042.13 Globin; Belongs to the globin family. (142 aa)    
Predicted Functional Partners:
Cla_1526
ABC transporter, periplasmic binding protein; Pfam match to PF01547.16 SBP_bac_1.
  
    0.594
putA
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
  
 0.593
Cla_1524
ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran; Belongs to the ABC transporter superfamily.
  
    0.577
Cla_1525
ABC transporter, permease protein; Pfam matches to PF00528.13 BPD_transp_1, and to PF00528.13 BPD_transp_1.
       0.572
Cla_1204
MCP-domain signal transduction protein; Pfam matches to PF08447.2 PAS_3, and to PF08447.2 PAS_3.
     
 0.563
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
      
 0.561
Cla_0942
Transcriptional regulator, BadM/Rrf2 family; Pfam match to PF02082.11 Rrf2.
     
 0.560
ctb
Conserved hypothetical protein.
  
  
 0.546
sodB
Superoxide dismutase (Fe); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
      
 0.540
pyrG
CTP synthetase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
      
 0.533
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.