Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Cla_1528ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran. (542 aa)    
Predicted Functional Partners:
Cla_0976
Putative permease, YjgP/YjgQ family; Pfam match to PF03739.5 YjgP_YjgQ.
     
  0.540
Cla_1363
Conserved hypothetical integral membrane protein; Pfam match to PF03739.5 YjgP_YjgQ.
     
  0.540
flgG2
Flagellar distal rod protein FlgG; Pfam match to PF00460.11 Flg_bb_rod.
    
   0.512
Cla_1311
Conserved hypothetical protein, putative amino acid adenylation domain protein; Pfam match to PF00501.19 AMP-binding.
 
  
 0.451
dsbA
Thiol:disulfide interchange protein, DsbA family.
  
     0.448
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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