STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1531Conserved hypothetical protein. (597 aa)    
Predicted Functional Partners:
Cla_1530
Conserved hypothetical protein, hemagglutination domain protein; Pfam match to PF05860.4 Haemagg_act.
 
 
 0.943
Cla_0114
Conserved hypothetical protein.
  
     0.575
cfrA
Iron-regulated outer membrane virulence protein, TonB receptor CfrA; Pfam matches to PF07715.6 Plug, and to PF00593.15 TonB_dep_Rec.
  
   
 0.538
Cla_0912
Conserved hypothetical protein.
  
    0.517
Cla_1243
Glycosyltransferase; Pfam match to PF05704.3 Caps_synth.
  
     0.509
Cla_0255
Conserved hypothetical integral membrane protein.
  
     0.466
Cla_0819
Conserved hypothetical protein.
  
     0.451
dsbI
Disulfide bond formation protein, DsbB family; Pfam match to PF02600.7 DsbB.
  
     0.438
holA
Conserved hypothetical protein; Pfam match to PF06144.4 DNA_pol3_delta.
  
     0.437
Cla_0337
Conserved hypothetical protein, predicted ATP/GTP-binding protein.
  
     0.426
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.