STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ctsGPutative Campylobacter transformation system protein CtsG; Pfam match to PF07963.3 N_methyl. (190 aa)    
Predicted Functional Partners:
ctsE
Putative type II protein secretion system E protein CtsE; Pfam match to PF00437.11 GSPII_E.
 
 
 0.930
Cla_1538
NFACT-R_1 domain-containing protein; Pfam match to PF05670.4 DUF814.
 
     0.838
gcp
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.825
Cla_1534
Conserved hypothetical protein.
       0.825
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.825
cdsA
Phosphatidate cytidylyltransferase; Pfam match to PF01148.11 CTP_transf_1.
       0.825
Cla_1537
Conserved hypothetical protein.
       0.816
ctsW
Conserved hypothetical protein, possible purine/pyrimidine phosphoribosyltransferase.
 
  
 0.798
ctsF
Putative type II protein secretion system F protein CtsF; Possible pseudogene; Pfam match to PF00482.14 GSPII_F.
 
  
 0.794
ctsD
Putative type II protein secretion system D protein CtsD; Pfam match to PF00263.12 Secretin; Belongs to the bacterial secretin family.
 
  
 0.790
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.