STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1548Conserved hypothetical protein. (139 aa)    
Predicted Functional Partners:
gss
Glutathionylspermidine synthase family protein; Pfam match to PF03738.5 GSP_synth.
   
   0.687
Cla_1554
Conserved hypothetical lipoprotein.
   
   0.685
Cla_1551
Conserved hypothetical protein (DUF520 domain protein); Pfam match to PF04461.4 DUF520; Belongs to the UPF0234 family.
   
   0.684
Cla_1549
ATPase, AAA family protein; Pfam match to PF00004.20 AAA.
       0.670
Cla_1550
Conserved hypothetical lipoprotein.
       0.669
HprA
2-hydroxyacid dehydrogenase family protein; Pfam match to PF00389.21 2-Hacid_dh.
       0.669
flgD
Flagellar hook assembly protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.512
Cla_1386
Conserved hypothetical protein (DUF452 domain protein); Pfam match to PF04301.4 DUF452.
  
     0.510
Cla_1086
Conserved hypothetical integral membrane protein.
  
     0.467
Cla_1085
Conserved hypothetical integral membrane protein (DUF1212 domain protein); Pfam match to PF06738.3 DUF1212.
  
     0.464
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.