STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1549ATPase, AAA family protein; Pfam match to PF00004.20 AAA. (570 aa)    
Predicted Functional Partners:
pflB
Conserved hypothetical integral membrane protein (TPR domain protein); Pfam matches to PF00515.19 TPR_1, and to PF00515.19 TPR_1.
  
  0.831
Cla_1550
Conserved hypothetical lipoprotein.
       0.825
Cla_1551
Conserved hypothetical protein (DUF520 domain protein); Pfam match to PF04461.4 DUF520; Belongs to the UPF0234 family.
       0.825
HprA
2-hydroxyacid dehydrogenase family protein; Pfam match to PF00389.21 2-Hacid_dh.
       0.825
gss
Glutathionylspermidine synthase family protein; Pfam match to PF03738.5 GSP_synth.
       0.825
Cla_1554
Conserved hypothetical lipoprotein.
 
     0.804
trxC
Possible periplasmic thioredoxin; Pfam match to PF00085.11 Thioredoxin.
  
  0.754
atpF
ATP synthase F0 sector, B' subunit; Pfam match to PF00430.9 ATP-synt_B; Belongs to the ATPase B chain family.
  
     0.687
napL
Periplasmic protein NapL.
  
 
 
 0.672
Cla_1548
Conserved hypothetical protein.
       0.670
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.