STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1550Conserved hypothetical lipoprotein. (159 aa)    
Predicted Functional Partners:
Cla_1549
ATPase, AAA family protein; Pfam match to PF00004.20 AAA.
       0.825
Cla_1551
Conserved hypothetical protein (DUF520 domain protein); Pfam match to PF04461.4 DUF520; Belongs to the UPF0234 family.
       0.825
HprA
2-hydroxyacid dehydrogenase family protein; Pfam match to PF00389.21 2-Hacid_dh.
       0.825
gss
Glutathionylspermidine synthase family protein; Pfam match to PF03738.5 GSP_synth.
       0.825
Cla_1554
Conserved hypothetical lipoprotein.
       0.773
Cla_1548
Conserved hypothetical protein.
       0.669
rpsU
Pfam match to PF01165.11 Ribosomal_S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.583
Cla_1555
Putative LysE family amino-acid efflux protein; Pfam match to PF01810.9 LysE.
       0.570
flgC
Flagellar proximal rod protein FlgC; Pfam matches to PF00460.11 Flg_bb_rod, and to PF06429.4 DUF1078; Belongs to the flagella basal body rod proteins family.
    
   0.512
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.